Simulate a multispecies coalescent forward in time and make a plot

Julia package providing FileIO-compatible loading of phylogenetic tree and network data from various formats into arbitrary types of graph container types.

All of the scripts and initial data used in the simulation study to evaluate SNaQ.jl version 1.1 as well as the empirical study of swordtails and platyfishes (Xiphophorus: Poeciliidae).

package to summarize features of a phylogenetic networks, or features shared across a sample of multiple phylogenetic networks

A REPL-based AI coding copilot for Julia — connect to Anthropic Claude, OpenAI, Ollama, or any compatible API

Code implementation for "Neural Neighbor Join for Accurate Molecular Phylogenetic Inference"

Files for inference of 4-leaf 4-cycle phylogenetic networks from aligned DNA sequence data

Squirrel: Reconstructing semi-directed phylogenetic level-1 networks from four-leaved networks and sequence alignments

PaNDA: a Python package for computing and maximizing phylogenetic diversity in phylogenetic networks

Quartet subsampling for inferring phylogenetic networks via sparse learning

Sketch phylogenetic trees and networks

shell tools for processing phylogenetic trees

High throughput tool for tall and wide multiple sequence alignment.

Assembly of Phylogenomic Datasets from High-Throughput Sequencing data

Fast likelihoods for time series from spectral densities

Spectral density estimation for irregularly sampled stationary processes

A Julia framework for developing phylogenetic models

Sampling from intractable distributions, with support for distributed and parallel methods

Tutorial Notebooks of BioJulia

Julia package for the analysis of trait evolution along a phylogeny, including phylogenetic networks.