Genetic Linkage Maps in Autopolyploids v 2.0

R package that makes linux environment modules available from R

A 21 century R console

crew launcher plugins for traditional high-performance computing clusters

A fresh approach to package installation

R package to send function calls as jobs on LSF, SGE, Slurm, PBS/Torque, or each via SSH

R Extension for Visual Studio Code

Covers the basics of mixed models, mostly using @lme4

Boilerplate and configs for my R development projects

Tools for working with databases in R

Automatically setup a drake project

A function definition generator.

Transparent proxy server that works as a poor man's VPN. Forwards over ssh. Doesn't require admin. Works with Linux and MacOS. Supports DNS tunneling.

Kinship (genetic relatedness) using GBS (genotyping-by-sequencing) with Depth adjustment

An open source multi-tool for exploring and publishing data

PERF is an Exhaustive Repeat Finder

VLC with a Syphon server

PopLDdecay: a fast and effective tool for linkage disequilibrium decay analysis based on variant call format(VCF) files

Alignment coverage analysis tool

Population genetics tests and estimators for pooled NGS data

Efficient pythonic random access to fasta subsequences

Variant calling and somatic mutation/CNV detection for next-generation sequencing data

A unified array job submitter for LSF, SGE/UGE and Slurm

Simple oligo analysis and primer design

RISE: "Live" Reveal.js Jupyter/IPython Slideshow Extension

Ubuntu 64 bit Vagrant VM for statistics and numerical libraries in Python

Useful bash one-liners for bioinformatics.

Scripts for design of PCR-based Marker Assays from DNA sequence variant data, plus Galaxy xml files

Official git repository for Biopython (originally converted from CVS)