Bio-Formats is a Java library for reading and writing data in life sciences image file formats. It is developed by the Open Microscopy Environment (particularly UW-Madison LOCI and Glencoe Software…

OMERO image region Vert.x asynchronous microservice server

Bio-Formats documentation

Deployment infrastructure for the Image Data Resource

Project planning and material repository for the 2024 challenge to generate 1 PB of OME-Zarr data

Gradle project for generating model jar for OMERO

This POM provides a parent from which SciJava-based projects can declare their build configurations. It ensures that projects all use a compatible build environment, including Java version, as well…

Bio-Formats Octave container based on openmicroscopy/octave

Alternate formulae repos for Homebrew

A simple POM to update Bio-Formats on a Fiji distribution

Examples showing how to consume Bio-Formats with Maven or Gradle

Java implementation of the Zarr Specification

Bio-Formats top-level build for all components

OME model (specification, code generator, implementation)

OME image compression (coder-decoder implementations)

Library for reading Metakit database files

Stubs for optional third-party components

Java API to handle Microsoft MDB format (Access). Used by Bio-Formats for Zeiss LSM metadata in MDB files.

OME Java ImageIO fork (deprecated)

Java library providing common functionality for all OME Java components

Gradle project containing Ice remoting code for OMERO

OME (Open Microscopy Environment) develops open-source software and data format standards for the storage and manipulation of biological light microscopy data. A joint project between universities,…

Main libjpeg-turbo repository

Minutes from the weekly OME community meetings

Bio-Formats image file format to raw format converter